SNP Profiles of PA 56 [PER] View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CT	CC	GG	GG	AT	CC	CC	GG	GG	AG	TT	AA
1._RUQ_32	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
2._RUQ_32	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
3._PA_56_[PER]	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
4._PA_56_[PER]	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
5._PA_56_[PER]	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
6._PA_56_[PER]	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
7._PA_56_[PER]	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
8._PA_56_[PER]	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
9._NA	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
10._NA	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
11._NA	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
12._NA	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
13._NA	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
14._-	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	AA	CC	AA	CC	AA	GG	CG	AT	CC	CT	GG	CC	AA
1._RUQ_32	GG	_	_	_	_	AC	_	CG	_	CC	_	_	_	_
2._RUQ_32	_	_	_	_	_	AC	_	CG	_	CC	_	_	_	AA
3._PA_56_[PER]	_	_	_	_	_	AC	_	CG	_	CC	_	_	_	AA
4._PA_56_[PER]	_	_	_	_	_	AC	_	CG	_	CC	_	_	_	GG
5._PA_56_[PER]	_	_	_	_	_	AC	_	CG	_	CC	_	_	_	GG
6._PA_56_[PER]	_	_	_	_	_	AC	_	CG	_	CC	_	_	_	GG
7._PA_56_[PER]	_	_	_	_	_	AC	_	CG	_	CC	_	_	_	GG
8._PA_56_[PER]	_	_	_	_	_	AC	_	CG	_	CC	_	_	_	GG
9._NA	GG	_	_	_	_	AC	_	CG	_	CC	_	_	_	GG
10._NA	GG	_	_	_	_	AC	_	CG	_	CC	_	_	_	GG
11._NA	GG	_	_	_	_	AC	_	CG	_	CC	_	_	_	GG
12._NA	GG	_	_	_	_	AC	_	CG	_	CC	_	_	_	GG
13._NA	GG	_	_	_	_	AC	_	CG	_	CC	_	_	_	GG
14._-	GG	_	_	_	_	AC	_	CG	_	CC	_	_	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	CT	GG	AG	TT	TT	AA	AA	TT	GG	GG	CC	AG	TT
1._RUQ_32	_	CT	GG	AG	_	_	AA	_	_	GG	-	_	AG	_
2._RUQ_32	_	_	GG	_	_	_	_	_	_	GG	_	_	AG	_
3._PA_56_[PER]	_	_	GG	_	_	_	_	_	_	GG	_	_	AG	_
4._PA_56_[PER]	_	_	GG	_	_	_	_	_	_	GG	_	_	AG	_
5._PA_56_[PER]	_	_	GG	_	_	_	_	_	_	GG	_	_	AG	_
6._PA_56_[PER]	_	_	GG	_	_	_	_	_	_	GG	_	_	AG	_
7._PA_56_[PER]	_	_	GG	_	_	_	_	_	_	GG	_	_	AG	_
8._PA_56_[PER]	_	_	GG	_	_	_	_	_	_	GG	_	_	AG	_
9._NA	_	CC	GG	AG	_	_	AA	_	CG	GG	GG	_	AG	_
10._NA	_	CC	GG	AG	_	_	AA	_	CG	GG	GG	_	AG	_
11._NA	_	CC	GG	AG	_	_	AA	_	CG	GG	GG	_	AG	_
12._NA	_	CC	GG	AG	_	_	AA	_	CG	GG	GG	_	AG	_
13._NA	_	CC	GG	AG	_	_	AA	_	CG	GG	GG	_	AG	_
14._-	_	_	CC	AG	_	_	AA	_	CG	CC	GG	_	AG	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	CC	GG	CT	CC	GT	AA	CC	TT	GG	TT	GG	GG	CG
1._RUQ_32	_	_	_	_	_	_	_	_	TT	_	_	_	_	CG
2._RUQ_32	_	_	GG	_	CC	_	_	_	TT	_	_	_	_	CG
3._PA_56_[PER]	_	_	GG	_	CC	_	_	_	TT	_	_	_	_	CG
4._PA_56_[PER]	_	_	GG	_	CC	_	_	_	TT	_	_	_	_	CG
5._PA_56_[PER]	_	_	GG	_	CC	_	_	_	TT	_	_	_	_	CG
6._PA_56_[PER]	_	_	GG	_	CC	_	_	_	TT	_	_	_	_	CG
7._PA_56_[PER]	_	_	GG	_	CC	_	_	_	TT	_	_	_	_	CG
8._PA_56_[PER]	_	_	GG	_	CC	_	_	_	TT	_	_	_	_	CG
9._NA	_	_	GG	_	CC	_	_	_	TT	_	_	_	_	CG
10._NA	_	_	GG	_	CC	_	_	_	TT	_	_	_	_	CG
11._NA	_	_	GG	_	CC	_	_	_	TT	_	_	_	_	CG
12._NA	_	_	GG	_	CC	_	_	_	TT	_	_	_	_	CG
13._NA	_	_	GG	_	CC	_	_	_	TT	_	_	_	_	CG
14._-	_	_	GG	_	_	_	_	_	AA	_	_	_	_	CG

	57	58
_Input profile	CT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_32	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_32	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._PA_56_[PER]	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._PA_56_[PER]	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._PA_56_[PER]	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._PA_56_[PER]	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._PA_56_[PER]	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._PA_56_[PER]	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._NA	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._NA	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._NA	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._NA	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._NA	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._-	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: PA_56_[PER] RUQ_32

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._PA_56_[PER] RUQ_32

96.4 %
14 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._PA_56_[PER] RUQ_32

96.2 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._PA_56_[PER]

96.2 %
13 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 238

Dapeng Zhang, 2016

4._PA_56_[PER]

88.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 6

Dapeng Zhang, 2016

5._PA_56_[PER]

88.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 4

Dapeng Zhang, 2016

6._PA_56_[PER]

88.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 3

Dapeng Zhang, 2016

7._PA_56_[PER]

88.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 2

Dapeng Zhang, 2016

8._PA_56_[PER]

88.5 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._PA_56_[PER] NA

84.2 %
19 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: Dead

10._PA_56_[PER] NA

84.2 %
19 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: Dead

11._PA_56_[PER] NA

84.2 %
19 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

12._PA_56_[PER] NA

84.2 %
19 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

13._PA_56_[PER] NA

84.2 %
19 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

14._PA_56_[PER] -

71.9 %
16 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 76, Tree: 1

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP176	10	TcSNP189
11	TcSNP194	12	TcSNP230	13	TcSNP290	14	TcSNP305	15	TcSNP329
16	TcSNP363	17	TcSNP421	18	TcSNP519	19	TcSNP522	20	TcSNP529
21	TcSNP546	22	TcSNP577	23	TcSNP589	24	TcSNP591	25	TcSNP640
26	TcSNP642	27	TcSNP644	28	TcSNP645	29	TcSNP660	30	TcSNP702
31	TcSNP723	32	TcSNP731	33	TcSNP739	34	TcSNP800	35	TcSNP823
36	TcSNP835	37	TcSNP836	38	TcSNP872	39	TcSNP899	40	TcSNP945
41	TcSNP998	42	TcSNP1010	43	TcSNP1019	44	TcSNP1053	45	TcSNP1062
46	TcSNP1112	47	TcSNP1144	48	TcSNP1205	49	TcSNP1230	50	TcSNP1237
51	TcSNP1253	52	TcSNP1275	53	TcSNP1293	54	TcSNP1401	55	TcSNP1404
56	TcSNP1458	57	TcSNP1524	58	TcSNP1527